All Issue

2021 Vol.26, Issue 3 Preview Page

Review (Special Issue)

31 August 2021. pp. 248-262
Abstract
References
1
Abraham, J.S., S. Sripoorna, S. Maurya, S. Makhija, R. Gupta and R. Toteja, 2019. Techniques and tools for species identification in ciliates: a review. Int. J. Syst. Evol. Microbiol., 69: 877-894. 10.1099/ijsem.0.00317630648937
2
Agatha, S. and J.C. Riedel-Lorjé, 2006. Redescription of Tintinnopsis cylindrica Daday, 1887 (Ciliophora: Spirotricha) and unification of tintinnid terminology. Acta Protozool., 45: 137-151.
3
Agatha, S. and M.C. Strüder-Kypke, 2014. What morphology and molecules tell us about the evolution of Oligotrichea (Alveolata, Ciliophora). Acta Protozool., 53: 77-90.
4
Agatha, S., 2010. Redescription of Tintinnopsis parvula Jörgensen, 1912 (Ciliophora: Spirotrichea: Tintinnina), including a novel lorica matrix. Acta Protozool., 49(3): 213-234.
5
Alder, V.A., 1999. Tintinnoinea. In: South Atlantic zooplankton, edited by Boltovskoy, D., Backhuys Publishers, Leiden, Netherlands, pp. 321-384.
6
Azam, F., T. Fenchel, J.G. Field, J.S. Gray, L.A. Meyer-Reil and F. Thingstad, 1983. The ecological role of water-column microbes in the sea. Mar. Ecol. Prog. Ser., 10(3): 257-263. 10.3354/meps010257
7
Bai, Y., R. Wang, W. Liu, A. Warren, Y. Zhao and X. Hu, 2020a. Redescriptions of three tintinnine ciliates (Ciliophora: Tintinnina) from coastal waters in China based on lorica features, cell morphology, and rDNA sequence data. Eur. J. Protistol., 72: 125659. 10.1016/j.ejop.2019.12565931825791
8
Bai, Y., R. Wang, W. Song, T. Suzuki and X. Hu, 2020b. Redescription of five tintinnine ciliates (Alveolata: Ciliophora: Oligotrichea) from coastal waters of Qingdao, China. Mar. Life Sci. Technol., 2(3): 209-221. 10.1007/s42995-020-00034-2
9
Chihara, M. and M. Murano, 1997. An illustrated guide to marine plankton in Japan. Tokai University Press. 1574 pp.
10
Dolan, J.R., 2010. Morphology and ecology in tintinnid ciliates of the marine plankton: correlates of lorica dimensions. Acta Protozool., 49(3): 235-244.
11
Feng, M., C. Wang, W. Zhang, G. Zhang, H. Xu, Y. Zhao, T. Xiao, C. Wang, W. Wang, Y. Bi and J. Liang, 2018. Annual variation of species richness and lorica oral diameter characteristics of tintinnids in a semi-enclosed bay of western Pacific. Estuar. Coast. Shelf Sci., 207: 164-174. 10.1016/j.ecss.2018.04.003
12
Foissner, W., 2014. An update of 'basic light and scanning electron microscopic methods for taxonomic studies of ciliated protozoa'. Int. J. Syst. Evol. Microbiol., 64: 271-292. 10.1099/ijs.0.057893-024198058
13
Gao, Z., I. Karlsson, S. Geisen, G. Kowalchuk and A. Jousset, 2019. Protists: puppet masters of the rhizosphere microbiome. Trends Plant Sci., 24(2): 165-176. 10.1016/j.tplants.2018.10.01130446306
14
Gong, J., S.J. Kim, S.Y. Kim, G.S. Min, D.M. Roberts, A. Warren and J.K. Choi, 2007. Taxonomic redescriptions of two ciliates, Protogastrostyla pulchra n. g., n. comb. and Hemigastrostyla enigmatica (Ciliophora: Spirotrichea, Stichotrichia), with phylogenetic analyses based on 18S and 28S rRNA gene sequences. J. Eukaryot. Microbiol., 54: 468-478. 10.1111/j.1550-7408.2007.00288.x18070324
15
Guindon, S., J.F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk and O. Gascuel, 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol., 59(3): 307-321. 10.1093/sysbio/syq01020525638
16
Hada, Y., 1932a. Report of the biological survey of Mutsu Bay. 24. The pelagic Ciliata, suborder Tintinnoinea. Sci. Rep. Tohoku Imp. Univ., Ser. 4 (Biol.), 7(4): 553-573.
17
Hada, Y., 1932b. The Tintinnoinea from the Sea of Okhotsk and its neighborhood. J. Fac. Sci. Hokkaido Univ., Ser. 6 (Zool.), 2(1): 37-59.
18
Hada, Y., 1935. On the pelagic ciliata, Tintinnoinea, from the East Indies with considerations on the character of the plankton in the seas. Bull. Japan. Soc. Sci. Fish., 4(4): 242-252. 10.2331/suisan.4.242
19
Hada, Y., 1937. The fauna of Akkeshi Bay: IV. The pelagic ciliata. J. Fac. Sci. Hokkaido Univ., Ser. 6 (Zool.), 5(3): 143-216.
20
Hada, Y., 1938. Studies on the Tintinnoinea from the western tropical Pacific. J. Fac. Sci. Hokkaido Univ., Ser. 6 (Zool.), 6(2): 87-190.
21
Jeong, H.J., Y.D. Yoo, J.S. Kim, N.S. Kang, T.H. Kim and J.H. Kim, 2004. Feeding by the marine planktonic ciliate Strombidinopsis jeokjo on common heterotrophic dinoflagellates. Aquat. Microb. Ecol., 36(2): 181-187. 10.3354/ame036181
22
Ji, D. and Y. Wang, 2018. An optimized protocol of protargol staining for ciliated protozoa. J. Eukaryot. Microbiol., 65(5): 705-708. 10.1111/jeu.1251529532600
23
Jung, J.H., J.H. Moon, K.M. Park, S. Kim, J.R. Dolan and E.J. Yang, 2018. Novel insights into the genetic diversity of Parafavella based on mitochondrial CO1 sequences. Zool. Scr., 47: 743-755. 10.1111/zsc.12312
24
Jung, J.H., Y.S. Baek, S. Kim, H.G. Choi and G.S. Min, 2011. A new marine ciliate, Metaurostylopsis antarctica nov. spec. (Ciliophora, Urostylida) from the Antarctic Ocean. Acta Protozool., 50: 289-300.
25
Kamiyama, T. and M. Tsujino, 1996. Seasonal variation in the species composition of tintinnid cilates in Hiroshima Bay, the Seto Inland Sea of Japan. J. Plankton. Res., 18(12): 2313-2327. 10.1093/plankt/18.12.2313
26
Kato, S. and A. Taniguchi, 1993. Tintinnid ciliates as indicator species of different water masses in the western North Pacific Polar Front. Fish. Oceanogr., 2(3/4): 166-174. 10.1111/j.1365-2419.1993.tb00132.x
27
Kim, J.H. and J.H. Jung, 2017. Cytological staining of protozoa: a case study on the impregnation of hypotrichs (Ciliophora: spirotrichea) using laboratory-synthesized protargol. Anim. Cells Syst., 21(6): 412-418. 10.1080/19768354.2017.1376707
28
Kim, S.Y., D. Xu, J.H. Jung and J.K. Choi, 2020. Phylogeny and genetic/morphological variation of Strombidinopsis minima-like species (Ciliophora: Choreotrichia). J. Eukaryot. Microbiol., 67: 115-124. 10.1111/jeu.1276131523898
29
Kim, S.Y., E.J. Yang, J. Gong and J.K. Choi, 2010. Redescription of Favella ehrenbergii (Claparède and Lachmann, 1858) Jörgensen, 1924 (Ciliophora: Choreotrichia), with phylogenetic analyses based on small subunit rRNA gene sequences. J. Eukaryot. Microbiol., 57(6): 460-467. 10.1111/j.1550-7408.2010.00500.x20846181
30
Kim, S.Y., J.K. Choi, J.R. Dolan, H.C. Shin, S. Lee and E.J. Yang, 2013. Morphological and ribosomal DNA-based characterization of Six Antarctic ciliate morphospecies from the Amundsen Sea with phylogenetic analyses. J. Eukaryot. Microbiol., 60: 497-513. 10.1111/jeu.1205723865618
31
Kim, Y.O. and E.S. Lee, 2016. Oligotrichs. In: Protists of Korea (Vol. 3), edited by Choi, J.K. et al., Korean Society of Protistologists, pp. 69-110.
32
Kim, Y.O. and J.M. Choi, 2016. Tintinnids. In: Protists of Korea (Vol. 3), edited by Choi, J.K. et al., Korean Society of Protistologists, pp. 2-68.
33
Kim, Y.O. and M.C. Jang, 2008. Temporal distribution of planktonic ciliates in Jangmok Bay, south coast of Korea. Ocean Polar Res., 30(4): 419-426. 10.4217/OPR.2008.30.4.419
34
Kim, Y.O., J. Chae, J.S. Hong and P.G. Jang, 2007. Comparing the distribution of ciliate plankton in inner and outer areas of a harbor divided by an artificial breakwater. Mar. Environ. Res., 64(1): 38-53. 10.1016/j.marenvres.2006.12.00817300835
35
Kim, Y.O., J.M. Choi, H.K. Kang, J.H. Noh, D.H. Choi and K.H. Oh, 2021. Spring distribution of ciliate plankton in the southeastern Yellow Sea in 2019. Ocean Sci. J., 56(1): 69-77. 10.1007/s12601-021-00004-4
36
Kim, Y.O., K. Shin, P.G. Jang, H.W. Choi, J.H. Noh, E.J. Yang, E. Kim and D. Jeon, 2012. Tintinnid species as biological indicators for monitoring intrusion of the warm oceanic waters into Korean coastal waters. Ocean Sci. J., 47(3): 161-172. 10.1007/s12601-012-0016-4
37
Kofoid, C.A. and A.S. Campbell, 1929. A conspectus of the marine and fresh-water ciliata belonging to the suborder Tintinnoinea, with descriptions of new species principally from the Agassiz expedition to the eastern tropical Pacific 1904-1905. Univ. Calif. Publ. Zool., 34: 1-403.
38
Kofoid, C.A. and A.S. Campbell, 1939. Reports on the scientific results of the expedition to the eastern tropical Pacific, in charge of Alexander Agassiz, by the U. S. Fish Commission Steamer "Albatross," from October, 1904, to March, 1905, Lieut.-Commander L. M. Garrett, U. S. N. Commanding. XXXVII. The Ciliata: the Tintinnoinea. Bull. Mus. Comp. Zool. Harv. Coll., 84: 1-473.
39
Kydd, J., H. Rajakaruna, E. Briski and S. Bailey, 2018. Examination of a high resolution laser optical plankton counter and FlowCAM for measuring plankton concentration and size. J. Sea Res., 133: 2-10. 10.1016/j.seares.2017.01.003
40
Lewandowska, A.M., D.G. Boyce, M. Hofmann, B. Matthiessen, U. Sommer and B. Worm, 2014. Effects of sea surface warming on marine plankton. Ecol. Lett., 17(5): 614-623. 10.1111/ele.1226524575918
41
Liu, W., Z. Yi, D. Xu, J.C. Clamp, J. Li, X. Lin and W. Song, 2015. Two new genera of planktonic ciliates and insights into the evolution of the family Strombidiidae (Protista, Ciliophora, Oligotrichia). PLoS One, 10(6): e0131726. 10.1371/journal.pone.013172626121340PMC4487692
42
Lynn, D.H. and D.J.S. Montagnes, 1988. Taxonomic descriptions of some conspicuous species of strobilidiine ciliates (Ciliophora: Choreotrichida) from the Isles of Shoals, Gulf of Maine. J. Mar. Biolog. Assoc. U.K., 68(4): 639-658. 10.1017/S0025315400028770
43
Lynn, D.H., D.J.S. Montagnes and E.B. Small, 1988. Taxonomic descriptions of some conspicuous species in the family Strombidiidae (Ciliophora: Oligotrichida) from the Isles of Shoals, Gulf of Maine. J. Mar. Biolog. Assoc. U.K., 68(2): 259-276. 10.1017/S0025315400052176
44
Medlin, L., H.J. Elwood, S. Stickel and M.L. Sogin, 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 71(2): 491-499. 10.1016/0378-1119(88)90066-2
45
Modigh, M. and S. Castaldo, 2002. Variability and persistence in tintinnid assemblages at a Mediterranean coastal site. Aquat. Microb. Ecol., 28(3): 299-311. 10.3354/ame028299
46
Modigh, M., S. Castaldo, M. Saggiomo and I. Santarpia, 2003. Distribution of tintinnid species from 42° N to 43° S through the Indian Ocean. Hydrobiologia, 503(1): 251-262. 10.1023/B:HYDR.0000008477.38383.d6
47
Montagnes, D.J.S. and D.H. Lynn, 1987. A quantitative protargol stain (QPS) for ciliates: method description and test of its quantitative nature. Mar. Microb. Food Webs, 2(2): 83-93.
48
Montagnes, D.J.S. and D.H. Lynn, 1991. Taxonomy of choreotrichs, the major marine planktonic ciliates, with emphasis on the aloricate forms. Mar. Microb. Food Webs, 5(1): 59-74.
49
Montagnes, D.J.S., D.H. Lynn, D.K. Stoecker and E.B. Small, 1988. Taxonomic descriptions of one new species and redescription of four species in the family Strombidiidae (Ciliophora, Oligotrichida). J. Protozool., 35(2): 189-197. 10.1111/j.1550-7408.1988.tb04322.x
50
Olson, R.J. and H.M. Sosik, 2007. A submersible imaging-in-flow instrument to analyze nano- and microplankton: Imaging FlowCytobot. Limnol. Oceanogr. Methods 5: 195-203. 10.4319/lom.2007.5.195
51
Pan, X., W.A. Bourland and W. Song, 2013. Protargol synthesis: an in-house protocol. J. Eukaryot. Microbiol., 60(6): 609-614. 10.1111/jeu.1206723870015
52
Park, M.H., J.H. Jung, E. Jo, K.M. Park, Y.S. Baek, S.J. Kim and G.S. Min, 2019. Utility of mitochondrial CO1 sequences for species discrimination of Spirotrichea ciliates (Protozoa, Ciliophora). Mitochondrial DNA Part A, 30: 148-155. 10.1080/24701394.2018.146456329701079
53
Peter, K.H. and U. Sommer, 2013. Phytoplankton cell size reduction in response to warming mediated by nutrient limitation. PLoS One, 8(9): e71528. 10.1371/journal.pone.007152824039717PMC3764198
54
Pierce, R.W. and J.T. Turner, 1992. Ecology of plankton ciliates in marine food webs. Rev. Aquat. Sci., 6(2): 139-181.
55
Putt, M. and D.K. Stoecker, 1989. An experimentally determined carbon : volume ratio for marine "oligotrichous" ciliates from estuarine and coastal waters. Limnol. Oceanogr., 34(6): 1097-1103. 10.4319/lo.1989.34.6.1097
56
Ronquist, F., M. Teslenko, P. van der Mark, D.L. Ayres, A. Darling, S. Hohna, B. Larget, L. Liu, M.A. Suchard and J.P. Huelsenbeck, 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol., 61(3): 539-542. 10.1093/sysbio/sys02922357727PMC3329765
57
Santoferrara, L.F., C. Bachy, V.A. Alder, J. Gong, Y.-O. Kim, A. Saccà, I.D. da Silva-Neto, M.C. Strüder-Kypke, A. Warren, D. Xu, Z. Yi and S. Agatha, 2016. Updating Biodiversity Studies in Loricate Protists: The Case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea). J. Eukaryot. Microbiol., 63(5): 651-656. 10.1111/jeu.1230326863912
58
Sheridan, J.A. and D. Bickford, 2011. Shrinking body size as an ecological response to climate change. Nat. Clim. Change., 1(8): 401-406. 10.1038/nclimate1259
59
Sonnenberg, R., A.W. Nolte and D. Tautz, 2007. An evaluation of LSU rDNA D1-D2 sequences for their use in species identification. Front. Zool., 4(1): 6. 10.1186/1742-9994-4-617306026PMC1805435
60
Stamatakis, A., 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30(9): 1312-1313. 10.1093/bioinformatics/btu03324451623PMC3998144
61
Tassin, A.M., M. Lemullois and A. Aubusson-Fleury, 2016. Paramecium tetraurelia basal body structure. Cilia, 5: 6. 10.1186/s13630-016-0026-426862393PMC4746876
62
Verity, P.G. and C. Langdon, 1984. Relationships between lorica volume, carbon, nitrogen, and ATP content of tintinnids in Narragansett Bay. J. Plankton. Res., 6(5): 859-868. 10.1093/plankt/6.5.859
63
White, T.J., T. Bruns, S. Lee and J.W. Taylor, 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A Guide to Methods and Applications, edited by Innis, M.A., D. H. Gelfand, J.J. Sninsky and T.J. White. Academic Press, Inc., New York. pp. 315-322. 10.1016/B978-0-12-372180-8.50042-11696192
64
Wilbert, N., 1975. Eine verbesserte Technik der Protargolimprägnation für Ciliaten. Mikrokosmos, 64: 171-179.
65
Wuyts, J., G. Perriere and Y. Van de Peer, 2004. The European ribosomal RNA database. Nucleic Acids Res., 32: D101-3. 10.1093/nar/gkh06514681368PMC308799
66
Xu, D., A. Warren and W. Song, 2009. Oligotrichs, In: Free-living ciliates in the Bohai and Yellow Seas, China, edited by Song, W., A. Warren, and X. Hu, Science Press, Beijing, pp. 307-351.
67
Xu, D., P. Sun, M.K. Shin and Y.O. Kim, 2012. Species boundaries in tintinnid ciliates: a case study - morphometric variability, molecular characterization, and temporal distribution of Helicostomella species (Ciliophora, Tintinnina). J. Eukaryot. Microbiol., 59(4): 351-358. 10.1111/j.1550-7408.2012.00625.x22591516
68
Yoo, K.I. and Y.O. Kim, 1990. Taxonomical studies on tintinnids (Protozoa: Ciliata) in Korean coastal waters 2. Yongil Bay. Korean J. Syst. Zool., 6(1): 87-122.
69
Yoo, K.I., Y.O. Kim and D.Y. Kim, 1988. Taxonomical studies on tintinnids (Protozoa: Ciliata) in Korean coastal waters. 1. Chinhae Bay. Korean J. Syst. Zool., 4(1): 67-90.
Information
  • Publisher :The Korean Society of Oceanography
  • Publisher(Ko) :한국해양학회
  • Journal Title :The Sea Journal of the Korean Society of Oceanography
  • Journal Title(Ko) :한국해양학회지 바다
  • Volume : 26
  • No :3
  • Pages :248-262
  • Received Date : 2021-05-27
  • Revised Date : 2021-07-12
  • Accepted Date : 2021-07-13
Journal Informaiton The Sea Journal of the Korean Society of Oceanography The Sea Journal of the Korean Society of Oceanography
  • NRF
  • KOFST
  • KISTI Current Status
  • KISTI Cited-by
  • crosscheck
  • orcid
  • open access
  • ccl
Journal Informaiton Journal Informaiton - close